Phylogenetic Profiling: How Much Input Data Is Enough? by Škunca, Nives, Dessimoz, Christophe

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Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web by Robinson, Oscar, Dylus, David, Dessimoz, Christophe

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Homoeologs: What Are They and How Do We Infer Them? by Glover, Natasha M., Redestig, Henning, Dessimoz, Christophe

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Inferring Horizontal Gene Transfer by Ravenhall, Matt, Škunca, Nives, Lassalle, Florent, Dessimoz, Christophe

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Compensation of Dosage-Sensitive Genes on the Chicken Z Chromosome by Zimmer, Fabian, Harrison, Peter W., Dessimoz, Christophe, Mank, Judith E.

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Clustering Genes of Common Evolutionary History by Gori, Kevin, Suchan, Tomasz, Alvarez, Nadir, Goldman, Nick, Dessimoz, Christophe

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Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference by Tan, Ge, Muffato, Matthieu, Ledergerber, Christian, Herrero, Javier, Goldman, Nick, Gil, Manuel, Dessimoz, Christophe

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The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements by Altenhoff, Adrian M., Škunca, Nives, Glover, Natasha, Train, Clément-Marie, Sueki, Anna, Piližota, Ivana, Gori, Kevin, Tomiczek, Bartlomiej, Müller, Steven, Redestig, Henning, Gonnet, Gaston H., Dessimoz, Christophe

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A Transcriptomic-Phylogenomic Analysis of the Evolutionary Relationships of Flatworms by Egger, Bernhard, Lapraz, François, Tomiczek, Bartłomiej, Müller, Steven, Dessimoz, Christophe, Girstmair, Johannes, Škunca, Nives, Rawlinson, Kate A., Cameron, Christopher B., Beli, Elena, Todaro, M. Antonio, Gammoudi, Mehrez, Noreña, Carolina, Telford, Maximilian J.

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Standardized benchmarking in the quest for orthologs by Altenhoff, Adrian M, Boeckmann, Brigitte, Capella-Gutierrez, Salvador, Dalquen, Daniel A, DeLuca, Todd, Forslund, Kristoffer, Huerta-Cepas, Jaime, Linard, Benjamin, Pereira, Cécile, Pryszcz, Leszek P, Schreiber, Fabian, da Silva, Alan Sousa, Szklarczyk, Damian, Train, Clément-Marie, Bork, Peer, Lecompte, Odile, von Mering, Christian, Xenarios, Ioannis, Sjölander, Kimmen, Jensen, Lars Juhl, Martin, Maria J, Muffato, Matthieu, Gabaldón, Toni, Lewis, Suzanna E, Thomas, Paul D, Sonnhammer, Erik, Dessimoz, Christophe

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The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease by Peng, Xinxia, Alföldi, Jessica, Gori, Kevin, Eisfeld, Amie J., Tyler, Scott R., Tisoncik-Go, Jennifer, Brawand, David, Law, G. Lynn, Skunca, Nives, Hatta, Masato, Gasper, David J., Kelly, Sara M., Chang, Jean, Thomas, Matthew J., Johnson, Jeremy, Berlin, Aaron M., Lara, Marcia, Russell, Pamela, Swofford, Ross, Turner-Maier, Jason, Young, Sarah, Hourlier, Thibaut, Aken, Bronwen, Searle, Steve, Sun, Xingshen, Yi, Yaling, Suresh, M., Tumpey, Terrence M., Siepel, Adam, Wisely, Samantha M., Dessimoz, Christophe, Kawaoka, Yoshihiro, Birren, Bruce W., Lindblad-Toh, Kerstin, Di Palma, Federica, Engelhardt, John F., Palermo, Robert E., Katze, Michael G.

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