Relationship between haemagglutination inhibition titre and immunity to influenza in ferrets 由 Wikramaratna, Paul S., Rambaut, Andrew

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Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set 由 Hall, Matthew, Woolhouse, Mark, Rambaut, Andrew

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Real-time digital pathogen surveillance — the time is now 由 Gardy, Jennifer, Loman, Nicholas J., Rambaut, Andrew

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Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1–PB2–HA Gene Complex 由 Dudas, Gytis, Bedford, Trevor, Lycett, Samantha, Rambaut, Andrew

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Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting 由 Bourhy, Hervé, Nakouné, Emmanuel, Hall, Matthew, Nouvellet, Pierre, Lepelletier, Anthony, Talbi, Chiraz, Watier, Laurence, Holmes, Edward C., Cauchemez, Simon, Lemey, Philippe, Donnelly, Christl A., Rambaut, Andrew

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The effect of genetic structure on molecular dating and tests for temporal signal 由 Murray, Gemma G. R., Wang, Fang, Harrison, Ewan M., Paterson, Gavin K., Mather, Alison E., Harris, Simon R., Holmes, Mark A., Rambaut, Andrew, Welch, John J.

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Global migration of influenza A viruses in swine 由 Nelson, Martha I., Viboud, Cécile, Vincent, Amy L., Culhane, Marie R., Detmer, Susan E., Wentworth, David E., Rambaut, Andrew, Suchard, Marc A., Holmes, Edward C., Lemey, Philippe

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Origins of the 2009 H1N1 influenza pandemic in swine in Mexico 由 Mena, Ignacio, Nelson, Martha I, Quezada-Monroy, Francisco, Dutta, Jayeeta, Cortes-Fernández, Refugio, Lara-Puente, J Horacio, Castro-Peralta, Felipa, Cunha, Luis F, Trovão, Nídia S, Lozano-Dubernard, Bernardo, Rambaut, Andrew, van Bakel, Harm, García-Sastre, Adolfo

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An Observational, Laboratory-Based Study of Outbreaks of Middle East Respiratory Syndrome Coronavirus in Jeddah and Riyadh, Kingdom of Saudi Arabia, 2014 由 Drosten, Christian, Muth, Doreen, Corman, Victor M., Hussain, Raheela, Al Masri, Malaki, HajOmar, Waleed, Landt, Olfert, Assiri, Abdullah, Eckerle, Isabella, Al Shangiti, Ali, Al-Tawfiq, Jaffar A., Albarrak, Ali, Zumla, Alimuddin, Rambaut, Andrew, Memish, Ziad A.

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Persistent HIV-1 replication maintains the tissue reservoir during therapy 由 Lorenzo-Redondo, Ramon, Fryer, Helen R., Bedford, Trevor, Kim, Eun-Young, Archer, John, Pond, Sergei L. Kosakovsky, Chung, Yoon-Seok, Penugonda, Sudhir, Chipman, Jeffrey, Fletcher, Courtney V., Schacker, Timothy W., Malim, Michael H., Rambaut, Andrew, Haase, Ashley T., McLean, Angela R., Wolinsky, Steven M.

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Global circulation patterns of seasonal influenza viruses vary with antigenic drift 由 Bedford, Trevor, Riley, Steven, Barr, Ian G., Broor, Shobha, Chadha, Mandeep, Cox, Nancy J., Daniels, Rodney S., Gunasekaran, C. Palani, Hurt, Aeron C., Kelso, Anne, Klimov, Alexander, Lewis, Nicola S., Li, Xiyan, McCauley, John W., Odagiri, Takato, Potdar, Varsha, Rambaut, Andrew, Shu, Yuelong, Skepner, Eugene, Smith, Derek J., Suchard, Marc A., Tashiro, Masato, Wang, Dayan, Xu, Xiyan, Lemey, Philippe, Russell, Colin A.

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Reduced evolutionary rate in reemerged Ebola virus transmission chains 由 Blackley, David J., Wiley, Michael R., Ladner, Jason T., Fallah, Mosoka, Lo, Terrence, Gilbert, Merle L., Gregory, Christopher, D’ambrozio, Jonathan, Coulter, Stewart, Mate, Suzanne, Balogun, Zephaniah, Kugelman, Jeffrey, Nwachukwu, William, Prieto, Karla, Yeiah, Adolphus, Amegashie, Fred, Kearney, Brian, Wisniewski, Meagan, Saindon, John, Schroth, Gary, Fakoli, Lawrence, Diclaro, Joseph W., Kuhn, Jens H., Hensley, Lisa E., Jahrling, Peter B., Ströher, Ute, Nichol, Stuart T., Massaquoi, Moses, Kateh, Francis, Clement, Peter, Gasasira, Alex, Bolay, Fatorma, Monroe, Stephan S., Rambaut, Andrew, Sanchez-Lockhart, Mariano, Scott Laney, A., Nyenswah, Tolbert, Christie, Athalia, Palacios, Gustavo

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The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases 由 Rabaa, Maia A., Tue, Ngo Tri, Phuc, Tran My, Carrique-Mas, Juan, Saylors, Karen, Cotten, Matthew, Bryant, Juliet E., Nghia, Ho Dang Trung, Cuong, Nguyen Van, Pham, Hong Anh, Berto, Alessandra, Phat, Voong Vinh, Dung, Tran Thi Ngoc, Bao, Long Hoang, Hoa, Ngo Thi, Wertheim, Heiman, Nadjm, Behzad, Monagin, Corina, van Doorn, H. Rogier, Rahman, Motiur, Tra, My Phan Vu, Campbell, James I., Boni, Maciej F., Tam, Pham Thi Thanh, van der Hoek, Lia, Simmonds, Peter, Rambaut, Andrew, Toan, Tran Khanh, Van Vinh Chau, Nguyen, Hien, Tran Tinh, Wolfe, Nathan, Farrar, Jeremy J., Thwaites, Guy, Kellam, Paul, Woolhouse, Mark E. J., Baker, Stephen

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Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone 由 Park, Daniel J., Dudas, Gytis, Wohl, Shirlee, Goba, Augustine, Whitmer, Shannon L.M., Andersen, Kristian G., Sealfon, Rachel S., Ladner, Jason T., Kugelman, Jeffrey R., Matranga, Christian B., Winnicki, Sarah M., Qu, James, Gire, Stephen K., Gladden-Young, Adrianne, Jalloh, Simbirie, Nosamiefan, Dolo, Yozwiak, Nathan L., Moses, Lina M., Jiang, Pan-Pan, Lin, Aaron E., Schaffner, Stephen F., Bird, Brian, Towner, Jonathan, Mamoh, Mambu, Gbakie, Michael, Kanneh, Lansana, Kargbo, David, Massally, James L.B., Kamara, Fatima K., Konuwa, Edwin, Sellu, Josephine, Jalloh, Abdul A., Mustapha, Ibrahim, Foday, Momoh, Yillah, Mohamed, Erickson, Bobbie R., Sealy, Tara, Blau, Dianna, Paddock, Christopher, Brault, Aaron, Amman, Brian, Basile, Jane, Bearden, Scott, Belser, Jessica, Bergeron, Eric, Campbell, Shelley, Chakrabarti, Ayan, Dodd, Kimberly, Flint, Mike, Gibbons, Aridth, Goodman, Christin, Klena, John, McMullan, Laura, Morgan, Laura, Russell, Brandy, Salzer, Johanna, Sanchez, Angela, Wang, David, Jungreis, Irwin, Tomkins-Tinch, Christopher, Kislyuk, Andrey, Lin, Michael F., Chapman, Sinead, MacInnis, Bronwyn, Matthews, Ashley, Bochicchio, James, Hensley, Lisa E., Kuhn, Jens H., Nusbaum, Chad, Schieffelin, John S., Birren, Bruce W., Forget, Marc, Nichol, Stuart T., Palacios, Gustavo F., Ndiaye, Daouda, Happi, Christian, Gevao, Sahr M., Vandi, Mohamed A., Kargbo, Brima, Holmes, Edward C., Bedford, Trevor, Gnirke, Andreas, Ströher, Ute, Rambaut, Andrew, Garry, Robert F., Sabeti, Pardis C.

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Real-time, portable genome sequencing for Ebola surveillance 由 Quick, Joshua, Loman, Nicholas J., Duraffour, Sophie, Simpson, Jared T., Severi, Ettore, Cowley, Lauren, Bore, Joseph Akoi, Koundouno, Raymond, Dudas, Gytis, Mikhail, Amy, Ouédraogo, Nobila, Afrough, Babak, Bah, Amadou, Baum, Jonathan HJ, Becker-Ziaja, Beate, Boettcher, Jan-Peter, Cabeza-Cabrerizo, Mar, Camino-Sanchez, Alvaro, Carter, Lisa L., Doerrbecker, Juiliane, Enkirch, Theresa, Dorival, Isabel Graciela García, Hetzelt, Nicole, Hinzmann, Julia, Holm, Tobias, Kafetzopoulou, Liana Eleni, Koropogui, Michel, Kosgey, Abigail, Kuisma, Eeva, Logue, Christopher H, Mazzarelli, Antonio, Meisel, Sarah, Mertens, Marc, Michel, Janine, Ngabo, Didier, Nitzsche, Katja, Pallash, Elisa, Patrono, Livia Victoria, Portmann, Jasmine, Repits, Johanna Gabriella, Rickett, Natasha Yasmin, Sachse, Andrea, Singethan, Katrin, Vitoriano, Inês, Yemanaberhan, Rahel L, Zekeng, Elsa G, Trina, Racine, Bello, Alexander, Sall, Amadou Alpha, Faye, Ousmane, Faye, Oumar, Magassouba, N’Faly, Williams, Cecelia V., Amburgey, Victoria, Winona, Linda, Davis, Emily, Gerlach, Jon, Washington, Franck, Monteil, Vanessa, Jourdain, Marine, Bererd, Marion, Camara, Alimou, Somlare, Hermann, Camara, Abdoulaye, Gerard, Marianne, Bado, Guillaume, Baillet, Bernard, Delaune, Déborah, Nebie, Koumpingnin Yacouba, Diarra, Abdoulaye, Savane, Yacouba, Pallawo, Raymond Bernard, Gutierrez, Giovanna Jaramillo, Milhano, Natacha, Roger, Isabelle, Williams, Christopher J, Yattara, Facinet, Lewandowski, Kuiama, Taylor, Jamie, Rachwal, Philip, Turner, Daniel, Pollakis, Georgios, Hiscox, Julian A., Matthews, David A., O’Shea, Matthew K., Johnston, Andrew McD, Wilson, Duncan, Hutley, Emma, Smit, Erasmus, Di Caro, Antonino, Woelfel, Roman, Stoecker, Kilian, Fleischmann, Erna, Gabriel, Martin, Weller, Simon A., Koivogui, Lamine, Diallo, Boubacar, Keita, Sakoba, Rambaut, Andrew, Formenty, Pierre, Gunther, Stephan, Carroll, Miles W.

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